Open source code repository
All code is freely available at https://github.com/matsengrp/gctree
Developer tools
Developer install:
make install
Warning
If you’re working on an ARM Mac, you may run into trouble installing the PyQt5 dependency
(which is also a dependency of the historydag package) via pip. As a workaround,
we recommend commenting out the the PyQt5, ete3, and historydag lines from
the setup.py and installing those via Conda.
Run tests:
make test
Format code:
make format
Lint:
make lint
Build docs locally (you can then see the generated documentation in docs/_build/html/index.html):
make docs
Docs are automatically deployed to github pages via a workflow on push to the main branch.