Python API for the gctree package

Classes

Top level classes, promoted from the branching_processes module.

CollapsedTree([tree, allow_repeats])	A collapsed tree, modeled as an infinite type Galton-Watson process run to extinction.
CollapsedForest([forest])	A collection of trees.

Modules

mutation_model	Mutation models.
utils	Utility functions.
isotyping	A module for incorporating isotype information in gctree inference.
branching_processes	This module contains classes for simulation and inference for a binary branching process with mutation in which the tree is collapsed to nodes that count the number of clonal leaves of each type.