historydag documentation

historydag is a package for representing collections of internally labeled trees, or ‘histories’ in a directed acyclic graph. For examples and information on getting started, see the quickstart below, or the historydag README on github

User Guide

• Quickstart

API Documentation

• Description
• Classes
  • historydag.HistoryDag
  • historydag.HistoryDagNode
• Functions
  • historydag.from_tree
  • historydag.empty_node
  • historydag.from_newick
  • historydag.history_dag_from_newicks
  • historydag.history_dag_from_etes
  • historydag.history_dag_from_histories
• Modules
  • historydag.dag
  • historydag.sequence_dag
  • historydag.mutation_annotated_dag
  • historydag.utils
  • historydag.parsimony
  • historydag.parsimony_utils
  • historydag.compact_genome
  • historydag.dag_node
  • historydag.counterops

Indices and tables

• Index

• Module Index

• Search Page